Installation

Prerequisites

Before installing scDynOmics, please ensure your system meets the following requirements:

• Python: Version 3.11 or newer is required.

• Hardware: At least one GPU is recommended for running the test module.

Install from Source

Currently, the package is available via GitHub. You can install it directly from the source repository using git and pip:

git clone https://github.com/KlughammerLab/scDynOmics.git
cd scDynOmics
pip install .

This command will automatically resolve and install all required core dependencies.

Verifying the Installation

To ensure the package and its environment are set up correctly on your GPU, you can run the built-in environment test at scripts/test.py:

python scripts/test.py --data_dir data/ --log_dir logs/